Atb sketch

atb sketch

Find closest ATB genomes using sketch distances

Synopsis

Find the closest genomes in the AllTheBacteria database to your input sequences using MinHash sketch distances (via sketchlib).

Requires sketchlib (Linux/macOS only). Run 'atb sketch install' to download it.

Options

  -h, --help   help for sketch

Options inherited from parent commands

      --config string     config file (default $HOME/.atb/config.toml)
      --data-dir string   directory for the local metadata index (default ~/.local/share/atb/data; override with $ATB_DATA_DIR)

SEE ALSO

• atb - Query and download AllTheBacteria genomes
• atb sketch fetch - Download the ATB sketch database from OSF
• atb sketch info - Show information about the local sketch database
• atb sketch install - Download the sketchlib binary (Linux/macOS only)
• atb sketch query - Find closest ATB genomes for your input sequences