fetch

atb sketch fetch

Download the ATB sketch database from OSF

Synopsis

Download the AllTheBacteria sketch database (~4.2 GB) from OSF. This is required before running 'atb sketch query'.

atb sketch fetch [flags]

Examples

  atb sketch fetch
  atb sketch fetch --force

Options

      --force   re-download even if database exists
  -h, --help    help for fetch

Options inherited from parent commands

      --config string     config file (default $HOME/.atb/config.toml)
      --data-dir string   directory for the local metadata index (default ~/.local/share/atb/data; override with $ATB_DATA_DIR)

SEE ALSO

• atb sketch - Find closest ATB genomes using sketch distances